Research Interests

I am broadly interested in mathematical and algorithmic foundations of machine learning for distributions and dynamical systems. My work draws on optimal transport, including primal and low-rank methods; variational optimization in Wasserstein space, including the JKO Scheme, Wasserstein gradient flows, and Fokker-Planck dynamics; and modern generative modeling approaches based on score-matching and diffusion models.

I apply these mathematical and machine-learning tools in AI for science, particularly to high-throughput single-cell data measured across time and space. I develop methods based on optimal transport, geometric deep learning, differential geometry, and related mathematical tools to infer correspondences between snapshot observations and reconstruct spatiotemporal and multiomic dynamics.

Recent Notes & News

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News

Riemannian Metric Learning for Alignment of Spatial Multiomics received the ISMB Best Student Paper Award!

Publications

Abstracts

Pan-cancer analysis of sex differences and their associations with ancestry and genomic biomarkers in a large comprehensive genomic profiling dataset

Kaplan, B., Halmos, P., Newberg, J., Sokol, E., Montesion, M.

AACR 2020

Pan-chromosome analysis does not reveal parental or ancestral bias in chromosome loss of heterozygosity

AACR 2020 (Accepted but not presented)

Talks

A selection of recent talks. Slides are linked when available.

Riemannian Metric Learning for Alignment of Spatial Multiomics

ISMB · 2026

Slides (PPT)

Optimal Transport Modeling of Cellular Differentiation: From Low-Rank Structure to Temporal Dynamics

SIAM NNP · 2025

Slides (PDF)

Hierarchical Refinement: Optimal Transport to Infinity and Beyond

ICML 2025 · Oral Presentation

Slides (PDF)

Hidden-Markov Optimal Transport for Developmental Time Series

RECOMB 2025 · Conference Talk

Slides (PDF)

Teaching and Service

Teaching Assistant: Organic Chemistry (CHEM UN2443, Columbia 2021)

Instructor: Introduction to Computer Science (King Summer Institute 2023)

Reviewer: TMLR 2026, NeurIPS 2026, Transactions on Pattern Analysis and Machine Intelligence 2026, ICML 2026, NeurIPS 2025, ISMB/ECCB 2025, RECOMB 2025, RECOMB 2024.

Graduate mentorship: Princeton Pre-Application PhD Program, First Year Mentorship Program.

Relevant Coursework

Partial Differential Equations (MAT522), Information Theory (COS 585), Theoretical Machine Learning (COS 511), Dynamical Systems (APC 571), Deep Learning Theory (ORF 543), Statistical Mechanics (CHEM3079), Machine Learning and Pattern Recognition (ECE 535), Advanced Algorithm Design (COS 521), Ordinary Differential Equations (MATHUN2030), Measure-Theoretic Probability (MAT 385), Stochastic Calculus (ORF 527; AUD), Advanced Organic Chemistry (CHEM GU4147), Biochemistry (BCHM 4501).

Other

Outside of my academic interests, I am an avid hiker and an amateur birder, botanist, and photographer.